3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13802

Details:

PFam ID : PF13802

PFam Domain Description : Galactose mutarotase-like

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 778

Average sequence length: 67.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13802	A9V6Y9_MONBE_163_242	79.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13802	A9WDV3_CHLAA_148_235	99.8

Sequence based PCA Plot of the family - PF13802 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=14 Length=8
Motif3 Start=51 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay