3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13795

Details:

PFam ID : PF13795

PFam Domain Description : HupE / UreJ protein

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 251

Average sequence length: 150.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13795	D0LNT6_HALO1_213_328	90.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13795	E8NAG1_MICTS_202_370	100

Sequence based PCA Plot of the family - PF13795 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=21 Length=8
Motif2 Start=3 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay