3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13794

Details:

PFam ID : PF13794

PFam Domain Description : tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 75

Average sequence length: 179.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13794	C5BZ35_BEUC1_21_205	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13794	C5BZ35_BEUC1_21_205	100

Sequence based PCA Plot of the family - PF13794 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=152 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay