3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13793

Details:

PFam ID : PF13793

PFam Domain Description : N-terminal domain of ribose phosphate pyrophosphokinase

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 1404

Average sequence length: 118.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13793	B2W415_PYRTR_59_93	78.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13793	C5KDQ9_9ALVE_133_268	100

Sequence based PCA Plot of the family - PF13793 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=87 Length=8
Motif2 Start=76 Length=8
Motif3 Start=58 Length=11
Motif4 Start=102 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay