3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13789

Details:

PFam ID : PF13789

PFam Domain Description : Domain of unknown function (DUF4181)

Number of Sequence in 50% Dataset : 41

Number of Sequence in Full Dataset : 65

Average sequence length: 96.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13789	D5DBB8_BACMD_8_113	72.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13789	D5DBB8_BACMD_8_113	100

Sequence based PCA Plot of the family - PF13789 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=30 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=21 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay