3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13788

Details:

PFam ID : PF13788

PFam Domain Description : Domain of unknown function (DUF4180)

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 82

Average sequence length: 107.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13788	C2G2A8_9SPHI_6_56	89.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13788	B2FNT3_STRMK_29_142	100

Sequence based PCA Plot of the family - PF13788 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay