3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13784

Details:

PFam ID : PF13784

PFam Domain Description : Ca2+ regulator and membrane fusion protein Fig1

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 225

Average sequence length: 82.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13784	A6FRL1_9RHOB_29_119	25.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13784	A6FRL1_9RHOB_29_119	100

Sequence based PCA Plot of the family - PF13784 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=17 Length=8
Motif2 Start=8 Length=8
Motif3 Start=40 Length=8
Motif4 Start=77 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay