3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13780

Details:

PFam ID : PF13780

PFam Domain Description : Domain of unknown function (DUF4176)

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 137

Average sequence length: 70.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13780	C3LKK7_BACAC_1_51	84.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13780	D0RS16_9STRE_109_200	100

Sequence based PCA Plot of the family - PF13780 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=30 Length=8
Motif2 Start=75 Length=11
Motif3 Start=51 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay