3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13779

Details:

PFam ID : PF13779

PFam Domain Description : Domain of unknown function (DUF4175)

Number of Sequence in 50% Dataset : 68

Number of Sequence in Full Dataset : 165

Average sequence length: 617.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13779	D5RTU5_9PROT_1_346	74.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13779	E8RN53_9CAUL_11_380	100

Sequence based PCA Plot of the family - PF13779 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=123 Length=8
Motif3 Start=97 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay