3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13778

Details:

PFam ID : PF13778

PFam Domain Description : Domain of unknown function (DUF4174)

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 146

Average sequence length: 114.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13778	C1F6Z4_ACIC5_38_161	93.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13778	C1F6Z4_ACIC5_38_161	100

Sequence based PCA Plot of the family - PF13778 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=8 Length=18
Motif2 Start=88 Length=8
Motif3 Start=114 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay