3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13776

Details:

PFam ID : PF13776

PFam Domain Description : Domain of unknown function (DUF4172)

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 152

Average sequence length: 77.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13776	A6EBW3_9SPHI_2_70	80.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13776	A6QC49_SULNB_7_88	100

Sequence based PCA Plot of the family - PF13776 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=61 Length=8
Motif2 Start=1 Length=28

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay