3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13772

Details:

PFam ID : PF13772

PFam Domain Description : AIG2-like family

Number of Sequence in 50% Dataset : 90

Number of Sequence in Full Dataset : 263

Average sequence length: 84.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13772	A7EC74_SCLS1_137_240	89.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13772	A7EC74_SCLS1_137_240	100

Sequence based PCA Plot of the family - PF13772 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=25 Length=8
Motif2 Start=94 Length=8
Motif3 Start=16 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay