3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13770

Details:

PFam ID : PF13770

PFam Domain Description : Domain of unknown function (DUF4169)

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 112

Average sequence length: 54.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13770	Q3EJ77_BACTI_107_169	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13770	E6YW94_9RHIZ_6_44	97.2

Sequence based PCA Plot of the family - PF13770 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=4 Length=18
Motif2 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay