3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13769

Details:

PFam ID : PF13769

PFam Domain Description : Virulence factor

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 94

Average sequence length: 82.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13769	Q3EJ77_BACTI_107_169	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13769	Q6SFV9_9BACT_6_92	100

Sequence based PCA Plot of the family - PF13769 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=38 Length=11
Motif2 Start=29 Length=8
Motif3 Start=20 Length=8
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay