3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13768

Details:

PFam ID : PF13768

PFam Domain Description : von Willebrand factor type A domain

Number of Sequence in 50% Dataset : 202

Number of Sequence in Full Dataset : 550

Average sequence length: 148.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13768	A2ZK06_ORYSI_61_128	75.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13768	A6DK65_9BACT_437_588	98.7

Sequence based PCA Plot of the family - PF13768 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=35 Length=8
Motif2 Start=123 Length=8
Motif3 Start=89 Length=8
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay