3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13764

Details:

PFam ID : PF13764

PFam Domain Description : E3 ubiquitin-protein ligase UBR4

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 73

Average sequence length: 547.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13764	C4QH40_SCHMA_6730_7372	61.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13764	D3B758_POLPA_4423_5241	100

Sequence based PCA Plot of the family - PF13764 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=511 Length=8
Motif4 Start=452 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay