3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13763

Details:

PFam ID : PF13763

PFam Domain Description : Domain of unknown function (DUF4167)

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 123

Average sequence length: 81.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13763	E7C9Z1_9RICK_1_98	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13763	E7C9Z1_9RICK_1_98	100

Sequence based PCA Plot of the family - PF13763 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=30 Length=8
Motif2 Start=1 Length=8
Motif3 Start=21 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay