3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13754

Details:

PFam ID : PF13754

PFam Domain Description : Bacterial Ig-like domain (group 3)

Number of Sequence in 50% Dataset : 101

Number of Sequence in Full Dataset : 1198

Average sequence length: 56.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13754	A0L364_SHESA_20_145	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13754	E6TRH7_BACCJ_1018_1103	100

Sequence based PCA Plot of the family - PF13754 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=30 Length=11
Motif2 Start=21 Length=8
Motif3 Start=1 Length=8
Motif4 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay