3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13751

Details:

PFam ID : PF13751

PFam Domain Description : Transposase DDE domain

Number of Sequence in 50% Dataset : 202

Number of Sequence in Full Dataset : 681

Average sequence length: 99.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13751	D3F968_CONWI_266_333	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13751	F1ZZX5_THEET_4_83	99.8

Sequence based PCA Plot of the family - PF13751 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=48 Length=8
Motif3 Start=1 Length=8
Motif4 Start=80 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay