3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13750

Details:

PFam ID : PF13750

PFam Domain Description : Bacterial Ig-like domain (group 3)

Number of Sequence in 50% Dataset : 52

Number of Sequence in Full Dataset : 63

Average sequence length: 113.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13750	D3F968_CONWI_266_333	94.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13750	A6BLQ4_9GAMM_9_167	100

Sequence based PCA Plot of the family - PF13750 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay