3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13749

Details:

PFam ID : PF13749

PFam Domain Description : ATP-dependent DNA helicase recG C-terminal

Number of Sequence in 50% Dataset : 96

Number of Sequence in Full Dataset : 743

Average sequence length: 85.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13749	A2SEH2_METPP_19_213	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13749	A4Q9V7_CORGB_266_360	100

Sequence based PCA Plot of the family - PF13749 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=29 Length=8
Motif2 Start=8 Length=20
Motif3 Start=66 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay