3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13746

Details:

PFam ID : PF13746

PFam Domain Description : 4Fe-4S binding domain

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 572

Average sequence length: 76.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13746	A1ASR8_PELPD_252_344	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13746	A1ASR8_PELPD_252_344	100

Sequence based PCA Plot of the family - PF13746 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=54 Length=8
Motif2 Start=80 Length=8
Motif3 Start=26 Length=8
Motif4 Start=2 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay