3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13745

Details:

PFam ID : PF13745

PFam Domain Description : HxxPF-repeated domain

Number of Sequence in 50% Dataset : 750

Number of Sequence in Full Dataset : 2685

Average sequence length: 92.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13745	D8Q8D6_SCHCM_1157_1249	92.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13745	F0XXC7_9STRA_1829_1950	100

Sequence based PCA Plot of the family - PF13745 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=22 Length=8
Motif2 Start=60 Length=8
Motif3 Start=84 Length=14
Motif4 Start=1 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay