3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13742

Details:

PFam ID : PF13742

PFam Domain Description : OB-fold nucleic acid binding domain

Number of Sequence in 50% Dataset : 90

Number of Sequence in Full Dataset : 959

Average sequence length: 97.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13742	Q3YIX7_HAEPR_1_66	93.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13742	C2MB31_9PORP_10_128	100

Sequence based PCA Plot of the family - PF13742 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=104 Length=8
Motif3 Start=1 Length=8
Motif4 Start=40 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay