3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13741

Details:

PFam ID : PF13741

PFam Domain Description : Mitochondrial ribosomal protein S25

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 62

Average sequence length: 200.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13741	E6ZTI8_9BASI_1_244	78.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13741	RT25_YARLI_1_229	100

Sequence based PCA Plot of the family - PF13741 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=183 Length=8
Motif3 Start=156 Length=8
Motif4 Start=114 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay