3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13740

Details:

PFam ID : PF13740

PFam Domain Description : ACT domain

Number of Sequence in 50% Dataset : 84

Number of Sequence in Full Dataset : 752

Average sequence length: 75.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13740	E5VPW0_9FIRM_1_51	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13740	A0YAW5_9GAMM_89_171	99.8

Sequence based PCA Plot of the family - PF13740 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=14 Length=8
Motif3 Start=24 Length=8
Motif4 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay