3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13739

Details:

PFam ID : PF13739

PFam Domain Description : Domain of unknown function (DUF4163)

Number of Sequence in 50% Dataset : 172

Number of Sequence in Full Dataset : 260

Average sequence length: 101.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13739	E5VPW0_9FIRM_1_51	81.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13739	D4VDS1_BACVU_37_171	100

Sequence based PCA Plot of the family - PF13739 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=96 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay