3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13737

Details:

PFam ID : PF13737

PFam Domain Description : Transposase DDE domain

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 218

Average sequence length: 90

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13737	Q6AR96_DESPS_4_64	19.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13737	A0LBD9_MAGSM_25_136	99.5

Sequence based PCA Plot of the family - PF13737 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=24 Length=8
Motif2 Start=1 Length=8
Motif3 Start=33 Length=8
Motif4 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay