3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13735

Details:

PFam ID : PF13735

PFam Domain Description : tRNA nucleotidyltransferase domain 2 putative

Number of Sequence in 50% Dataset : 244

Number of Sequence in Full Dataset : 450

Average sequence length: 148.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13735	E3Z8Z7_LISIN_1_67	88.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13735	E7M469_9BACL_250_440	100

Sequence based PCA Plot of the family - PF13735 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=140 Length=8
Motif3 Start=104 Length=8
Motif4 Start=117 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay