3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13731

Details:

PFam ID : PF13731

PFam Domain Description : WxL domain surface cell wall-binding

Number of Sequence in 50% Dataset : 138

Number of Sequence in Full Dataset : 326

Average sequence length: 191.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13731	E1JPS3_9LACO_19_136	90.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13731	Q88VA1_LACPL_281_448	100

Sequence based PCA Plot of the family - PF13731 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=94 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay