3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13730

Details:

PFam ID : PF13730

PFam Domain Description : Helix-turn-helix domain

Number of Sequence in 50% Dataset : 187

Number of Sequence in Full Dataset : 572

Average sequence length: 53.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13730	B1BI10_CLOPE_15_78	67.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13730	A4ESQ3_9RHOB_127_178	99.6

Sequence based PCA Plot of the family - PF13730 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=33 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay