3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13729

Details:

PFam ID : PF13729

PFam Domain Description : F plasmid transfer operon, TraF, protein

Number of Sequence in 50% Dataset : 55

Number of Sequence in Full Dataset : 119

Average sequence length: 248.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13729	C5BLJ4_TERTT_52_347	87.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13729	E5B9L2_ERWAM_54_328	100

Sequence based PCA Plot of the family - PF13729 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=1 Length=17
Motif3 Start=207 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay