3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13728

Details:

PFam ID : PF13728

PFam Domain Description : F plasmid transfer operon protein

Number of Sequence in 50% Dataset : 69

Number of Sequence in Full Dataset : 169

Average sequence length: 177.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13728	D5CL55_ENTCC_15_131	73.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13728	E8RVY5_9CAUL_47_296	100

Sequence based PCA Plot of the family - PF13728 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay