3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13727

Details:

PFam ID : PF13727

PFam Domain Description : CoA-binding domain

Number of Sequence in 50% Dataset : 729

Number of Sequence in Full Dataset : 1599

Average sequence length: 170.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13727	Q7NT81_CHRVO_101_197	80.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13727	A9CZY7_9RHIZ_25_256	100

Sequence based PCA Plot of the family - PF13727 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=46 Length=8
Motif4 Start=83 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay