3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13726

Details:

PFam ID : PF13726

PFam Domain Description : Na+-H+ antiporter family

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 184

Average sequence length: 88.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13726	C6RWG8_VIBCH_2_49	37.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13726	C8N7F4_9GAMM_2_110	96.7

Sequence based PCA Plot of the family - PF13726 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=81 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay