3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13724

Details:

PFam ID : PF13724

PFam Domain Description : DNA-binding domain

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 24

Average sequence length: 54.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13724	A6F8A2_9GAMM_10_283	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13724	D7M6E8_ARALL_1_109	100

Sequence based PCA Plot of the family - PF13724 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay