3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13723

Details:

PFam ID : PF13723

PFam Domain Description : Beta-ketoacyl synthase, N-terminal domain

Number of Sequence in 50% Dataset : 64

Number of Sequence in Full Dataset : 237

Average sequence length: 205.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13723	A6F8A2_9GAMM_10_283	96.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13723	A6F8A2_9GAMM_10_283	100

Sequence based PCA Plot of the family - PF13723 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=147 Length=8
Motif2 Start=86 Length=8
Motif3 Start=29 Length=8
Motif4 Start=112 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay