3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13722

Details:

PFam ID : PF13722

PFam Domain Description : C-terminal domain on CstA (DUF4161)

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 546

Average sequence length: 123.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13722	E0XSS7_9PROT_1_112	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13722	B5JN85_9BACT_451_596	100

Sequence based PCA Plot of the family - PF13722 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=21 Length=17
Motif2 Start=1 Length=8
Motif3 Start=100 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay