3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13720

Details:

PFam ID : PF13720

PFam Domain Description : Udp N-acetylglucosamine O-acyltransferase; Domain 2

Number of Sequence in 50% Dataset : 75

Number of Sequence in Full Dataset : 757

Average sequence length: 83.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13720	B5E9I6_GEOBB_1_37	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13720	D0N7B6_PHYIT_251_350	100

Sequence based PCA Plot of the family - PF13720 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=37 Length=8
Motif2 Start=92 Length=8
Motif3 Start=18 Length=11
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay