3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13719

Details:

PFam ID : PF13719

PFam Domain Description : zinc-ribbon domain

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 220

Average sequence length: 36.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13719	B5E9I6_GEOBB_1_37	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13719	B5ELB0_ACIF5_1_37	100

Sequence based PCA Plot of the family - PF13719 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=17
Motif2 Start=26 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay