3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13718

Details:

PFam ID : PF13718

PFam Domain Description : GNAT acetyltransferase 2

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 330

Average sequence length: 184.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13718	C9NSI4_9VIBR_372_491	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13718	B9PQH2_TOXGO_593_879	100

Sequence based PCA Plot of the family - PF13718 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=76 Length=8
Motif2 Start=255 Length=8
Motif3 Start=98 Length=8
Motif4 Start=10 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay