3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13717

Details:

PFam ID : PF13717

PFam Domain Description : zinc-ribbon domain

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 95

Average sequence length: 35.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13717	A0LMJ8_SYNFM_1_35	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13717	A5CC26_ORITB_1_38	100

Sequence based PCA Plot of the family - PF13717 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=19 Length=14
Motif2 Start=1 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay