3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13716

Details:

PFam ID : PF13716

PFam Domain Description : Divergent CRAL/TRIO domain

Number of Sequence in 50% Dataset : 112

Number of Sequence in Full Dataset : 358

Average sequence length: 141.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13716	E5SQQ4_TRISP_41_149	60.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13716	A9V0G7_MONBE_61_265	96.0

Sequence based PCA Plot of the family - PF13716 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=143 Length=8
Motif4 Start=54 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay