3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13715

Details:

PFam ID : PF13715

PFam Domain Description : Cna protein B-type domain

Number of Sequence in 50% Dataset : 1365

Number of Sequence in Full Dataset : 5028

Average sequence length: 84.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13715	D4X1V9_BACOV_34_87	95.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13715	D1Y043_9BACT_24_145	99.9

Sequence based PCA Plot of the family - PF13715 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=13 Length=8
Motif3 Start=41 Length=8
Motif4 Start=60 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay