3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13712

Details:

PFam ID : PF13712

PFam Domain Description : Glycosyltransferase like family

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 103

Average sequence length: 199.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13712	YAT6_RHOBL_18_223	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13712	D4VQD2_9BACE_2_225	100

Sequence based PCA Plot of the family - PF13712 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=17 Length=17
Motif2 Start=1 Length=8
Motif3 Start=115 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay