3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13711

Details:

PFam ID : PF13711

PFam Domain Description : Domain of unknown function (DUF4160)

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 284

Average sequence length: 63.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13711	E9FQ72_9STRE_8_74	89.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13711	A8YGB4_MICAE_11_85	100

Sequence based PCA Plot of the family - PF13711 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=24 Length=18
Motif2 Start=15 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay