3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13710

Details:

PFam ID : PF13710

PFam Domain Description : ACT domain

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 838

Average sequence length: 62.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13710	B0C8S1_ACAM1_196_327	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13710	C3WDJ4_FUSMR_13_75	100

Sequence based PCA Plot of the family - PF13710 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=33 Length=8
Motif2 Start=52 Length=11
Motif3 Start=1 Length=25

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay