3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13709

Details:

PFam ID : PF13709

PFam Domain Description : Domain of unknown function (DUF4159)

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 214

Average sequence length: 206.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13709	B0C8S1_ACAM1_196_327	95.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13709	Q01YJ8_SOLUE_43_273	100

Sequence based PCA Plot of the family - PF13709 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=8 Length=8
Motif2 Start=77 Length=11
Motif3 Start=53 Length=8
Motif4 Start=116 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay