3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13708

Details:

PFam ID : PF13708

PFam Domain Description : Methyltransferase domain

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 118

Average sequence length: 168.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13708	D0CEW8_ACIBA_70_249	68.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13708	A4EPM3_9RHOB_66_300	100

Sequence based PCA Plot of the family - PF13708 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=44 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay