3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13705

Details:

PFam ID : PF13705

PFam Domain Description : TRC8 N-terminal domain

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 41

Average sequence length: 424.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13705	A7RGS7_NEMVE_1_300	73.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13705	A8XKW2_CAEBR_48_561	100

Sequence based PCA Plot of the family - PF13705 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=286 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay